PUBLIKASI JURNAL

Self-attention and asymmetric multi-layer perceptron-gated recurrent unit blocks for protein secondary structure prediction. [2024].
(1) DEWI PRAMUDI ISMI (2) Prof. Dr.-Ing. Mhd. Reza M. I. Pulungan, S.Si., M.Sc. (3) Afiahayati, S.Kom., M.Cs., Ph.D

Sequence analysis of the Spike, RNA-dependent RNA polymerase, and protease genes reveals a distinct evolutionary pattern of SARS-CoV-2 variants circulating in Yogyakarta and Central Java provinces, Indonesia. [2024].
(1) dr. Mohamad Saifudin Hakim, M.Sc, Ph.D. (2) Prof. dr. Gunadi, Ph.D, Sp.BA., Subsp.DA(K) (3) Ayu Rahayu, S.Si., M.Si. (4) Hendra Wibawa (5) LAUDRIA STELLA E (6) ENDAH SUPRIYATI (7) Khanza Adzkia Vujira (8) dr. Kristy Iskandar, M.Sc, Ph.D, Sp.A. Subsp.Neuro.(K) (9) Afiahayati, S.Kom., M.Cs., Ph.D (10) dr. Marselinus Edwin Widyanto Daniwijaya, Ph.D., Sp. MK (11) dr. Farida Nur Oktoviani (12) dr. Luthvia Annisa, Sp.MK. (13) FADILA DYAH TRIE U (14) VERRELL CHRISTOPHER AMADEUS (15) Setiani Silvi Nurhidayah (16) Tiara Putri Leksono (18) Prof. dr. Eggi Arguni, M.Sc., Ph.D., Sp.A(K). (19) Prof. dr. Titik Nuryastuti, M.Si., Ph.D., Sp.MK(K). (20) Prof. dr. Tri Wibawa, Ph.D., Sp.MK(K)

Prognostic factors for the outcomes of COVID-19 patients infected with SARS-CoV-2 Omicron and Delta variants. [2023].
(1) Prof. dr. Gunadi, Ph.D, Sp.BA., Subsp.DA(K) (2) dr. Mohamad Saifudin Hakim, M.Sc, Ph.D. (3) Hendra Wibawa (4) KHANZA ADZKIA VUJIRA (5) Dyah Ayu Puspitarani (6) ENDAH SUPRIYATI (7) dr. Ika Trisnawati, M.Sc., Sp.PD-KP (8) dr. Kristy Iskandar, M.Sc, Ph.D, Sp.A. Subsp.Neuro.(K) (9) dr. Riat El Khair, M.Sc., Sp.PK. (10) Afiahayati, S.Kom., M.Cs., Ph.D (11) dr. Siswanto, Sp.P(K) (12) YUNIKA PUSPA DEWI (13) Dr. drh. Sri Handayani Irianingsih, M. Biotech. (14) dr. Dwi Aris Agung Nugrahaningsih, M.Sc., Ph.D (15) LAUDRIA STELLA E (16) FADILA DYAH TRIE U (19) NATHANIA CHRISTI P K (20) dr. Yekti Hediningsih, SpPK, Msi.Med (21) dr. Nur Rahmi Ananda, Sp.PD-KP. (22) MARCELLUS (23) Prof. dr. Eggi Arguni, M.Sc., Ph.D., Sp.A(K). (24) Prof. dr. Titik Nuryastuti, M.Si., Ph.D., Sp.MK(K). (25) Prof. dr. Tri Wibawa, Ph.D., Sp.MK(K)

CNN-Based Classification for Highly Similar Vehicle Model Using Multi-Task Learning. [2022].
(1) DONNY AVIANTO (2) Prof. Drs. Agus Harjoko, M.Sc., Ph.D. (3) Afiahayati, S.Kom., M.Cs., Ph.D

GamaComet: A Deep Learning-Based Tool for the Detection and Classification of DNA Damage from Buccal Mucosa Comet Assay Images. [2022].
(1) Afiahayati, S.Kom., M.Cs., Ph.D (2) Edgar Anarossi (3) drg. Ryna Dwi Yanuaryska, Ph.D (4) Dr. Sri Mulyana, M.Kom.

Deep learning for protein secondary structure prediction: Pre and post- AlphaFold. [2022].
(1) DEWI PRAMUDI ISMI (2) Prof. Dr.-Ing. Mhd. Reza M. I. Pulungan, S.Si., M.Sc. (3) Afiahayati, S.Kom., M.Cs., Ph.D

A Comparison of Bioinformatics Pipelines for Enrichment Illumina Next Generation Sequencing Systems in Detecting SARS-CoV-2 Virus Strains. [2022].
(1) Afiahayati, S.Kom., M.Cs., Ph.D (2) Stefanus Bernard, S.Bio.Inf (3) Prof. dr. Gunadi, Ph.D, Sp.BA., Subsp.DA(K) (4) drh. Hendra Wibawa, M.Si., Ph.D. (5) dr. Mohamad Saifudin Hakim, M.Sc, Ph.D. (6) MARCELLUS (7) Dr.rer.nat. Arli Aditya Parikesit, S.Si., M.Si (8) Chandra Kusuma Dewa, S.Kom., M.Cs., Ph.D. (9) Prof. Yasubumi Sakakibara, Ph.D.

Performance Comparison of Similarity Measure Algorithm as Data Preprocessing Stage: Text Normalization in Bahasa Indonesia. [2022].
(1) ACHMAD YOHNI WAHYU F (2) Afiahayati, S.Kom., M.Cs., Ph.D (3) Vincent Michael Sutanto

IDENTIFYING HATE SPEECH IN BAHASA INDONESIA WITH LEXICON-BASED FEATURES AND SYNONYM-BASED QUERY EXPANSION. [2022].
(1) Atmaja Wikandiputra (2) Afiahayati, S.Kom., M.Cs., Ph.D (3) Vincent Michael Sutanto

Fusion of BIFFOA and Adaptive Two-Phase Mutation for Helmetless Motorcyclist Detection. [2022].
(1) SUTIKNO (2) Prof. Drs. Agus Harjoko, M.Sc., Ph.D. (3) Afiahayati, S.Kom., M.Cs., Ph.D

Adaptive Lévy Flower Pollination Algorithm for Multiple Objective Optimization. [2022].
(1) KADEK GEMILANG S (2) Prof. Drs. Retantyo Wardoyo, M.Sc., Ph.D. (3) Afiahayati, S.Kom., M.Cs., Ph.D

Improving Detection Performance of Helmetless Motorcyclists using the Combination of HOG, HOP, and LDB Descriptors. [2022].
(1) SUTIKNO (2) Prof. Drs. Agus Harjoko, M.Sc., Ph.D. (3) Afiahayati, S.Kom., M.Cs., Ph.D

Forecasting the Cumulative COVID-19 Cases in Indonesia Using Flower Pollination Algorithm. [2022].
(1) Afiahayati, S.Kom., M.Cs., Ph.D (3) Prof. Dra. Sri Hartati, M.Sc., Ph.D. (4) Yunita Sari, S.Kom., M.Sc., Ph.D. (6) Diyah Utami Kusumaning Putri, S.Kom., M.Sc., M.Cs. (7) Aina Musdholifah, S.Kom., M.Kom. Ph.D (8) Prof. Drs. Retantyo Wardoyo, M.Sc., Ph.D.

Is the infection of the SARS-CoV-2 Delta variant associated with the outcomes of COVID-19 patients?. [2021].
(1) Prof. dr. Gunadi, Ph.D, Sp.BA., Subsp.DA(K) (2) dr. Mohamad Saifudin Hakim, M.Sc, Ph.D. (3) drh. Hendra Wibawa, M.Si., Ph.D. (4) MARCELLUS (5) Vivi Setiawaty (6) Slamet (7) dr. Ika Trisnawati, M.Sc., Sp.PD-KP (8) ENDAH SUPRIYATI (9) dr. Riat El Khair, M.Sc., Sp.PK. (10) dr. Kristy Iskandar, M.Sc, Ph.D, Sp.A. Subsp.Neuro.(K) (11) Afiahayati, S.Kom., M.Cs., Ph.D (12) dr. Siswanto, Sp.P(K) (13) Irene (14) dr. Nungki Anggorowati, Sp.PA(K)., Ph.D. (15) dr. Marselinus Edwin Widyanto Daniwijaya, Ph.D., Sp. MK (16) dr. Dwi Aris Agung Nugrahaningsih, M.Sc., Ph.D (17) YUNIKA PUSPA DEWI (18) Dyah Ayu Puspitarani (19) IRENE TANIA (20) KHANZA ADZKIA VUJIRA (21) MUHAMMAD BUSTON A (22) GITA CHRISTY GABRIELA (23) LAUDRIA STELLA E (24) BUNGA CITTA NIRMALA (25) ESENSI TARIAN GEOMETRI (26) ABIRAFDI AMAJIDA DARUTAMA (27) ANISA ADITYARINI K (28) Lestari (29) Sri Handayani Irianingsih (30) Siti Khoiriyah (31) Ina Lestari (32) dr. Nur Rahmi Ananda, Sp.PD-KP. (33) Prof. dr. Eggi Arguni, M.Sc., Ph.D., Sp.A(K). (34) Prof. dr. Titik Nuryastuti, M.Si., Ph.D., Sp.MK(K). (35) Ph.D Tri Wibawa dr.

Clustering Indonesian Patients with Personality Disorders using Fuzzy C-Means. [2021].
(1) ALIFIA LISTU SAMATHA (2) Afiahayati, S.Kom., M.Cs., Ph.D (3) Fuad Hamsyah, S.Psi., M.Sc.

Association between prognostic factors and the outcomes of patients infected with SARS-CoV-2 harboring multiple spike protein mutations. [2021].
(1) Prof. dr. Gunadi, Ph.D, Sp.BA., Subsp.DA(K) (2) dr. Mohamad Saifudin Hakim, M.Sc, Ph.D. (3) drh. Hendra Wibawa, M.Si., Ph.D. (4) MARCELLUS (5) dr. Ika Trisnawati, M.Sc., Sp.PD-KP (6) ENDAH SUPRIYATI (7) Afiahayati, S.Kom., M.Cs., Ph.D (8) dr. Riat El Khair, M.Sc., Sp.PK. (9) dr. Kristy Iskandar, M.Sc, Ph.D, Sp.A. Subsp.Neuro.(K) (10) dr. Siswanto, Sp.P(K) (11) Irene (12) dr. Nungki Anggorowati, Sp.PA(K)., Ph.D. (13) dr. Marselinus Edwin Widyanto Daniwijaya, Ph.D., Sp. MK (14) dr. Dwi Aris Agung Nugrahaningsih, M.Sc., Ph.D (15) YUNIKA PUSPA DEWI (16) Susan Simanjaya (17) RADEN AJENG DYAH AYU (18) HANA FAUZYYAH HANIFIN (19) ALVINA ALEXANDRA S (20) IRENE TANIA (21) CITA SHAFIRA AMALIA (22) I PUTU ADITIO ARTAYASA (23) HARIES RACHMAN (24) Herdiyanto Mulyawan (25) dr. Nur Rahmi Ananda, Sp.PD-KP. (26) Prof. dr. Eggi Arguni, M.Sc., Ph.D., Sp.A(K). (27) Prof. dr. Titik Nuryastuti, M.Si., Ph.D., Sp.MK(K). (28) Prof. dr. Tri Wibawa, Ph.D., Sp.MK(K)

Molecular epidemiology of SARS-CoV-2 isolated from COVID-19 family clusters. [2021].
(1) Prof. dr. Gunadi, Ph.D, Sp.BA., Subsp.DA(K) (2) drh. Hendra Wibawa, M.Si., Ph.D. (3) dr. Mohamad Saifudin Hakim, M.Sc, Ph.D. (4) MARCELLUS (5) dr. Ika Trisnawati, M.Sc., Sp.PD-KP (6) dr. Riat El Khair, M.Sc., Sp.PK. (7) dr. Rina Triasih, M.Med(Paed)., Sp.A(K)., Ph.D. (8) Irene (9) Afiahayati, S.Kom., M.Cs., Ph.D (10) dr. Kristy Iskandar, M.Sc, Ph.D, Sp.A. Subsp.Neuro.(K) (11) dr. Siswanto, Sp.P(K) (12) dr. Nungki Anggorowati, Sp.PA(K)., Ph.D. (13) dr. Marselinus Edwin Widyanto Daniwijaya, Ph.D., Sp. MK (14) ENDAH SUPRIYATI (15) dr. Dwi Aris Agung Nugrahaningsih, M.Sc., Ph.D (16) dr. Eko Budiono, Sp.PD-KP (17) dr. Heni Retnowulan, M. Kes., Sp. PD-KP (18) YUNIKA PUSPA DEWI (19) dr. Ira Puspitawati, M.Kes., Sp.PK(K). (20) Prof. Dr. dr. Osman Sianipar, M.Sc., Sp.PK. (21) Dwiki Afandy (22) Susan Simanjaya (23) WILLIAM WIDITJIARSO (24) Dyah Ayu Puspitarani (25) FADIL FAHRI (26) UNTUNG RIAWAN (27) Aditya Rifqi Fauzi (28) ALVIN SANTOSO KALIM (29) dr. Nur Rahmi Ananda, Sp.PD-KP. (30) dr. Amalia Setyati, Sp.A(K). (31) dr. Dwikisworo Setyowireni, Sp.A(K). (32) Dr. dr. Ida Safitri Laksanawati, Sp.A(K) (33) Prof. dr. Eggi Arguni, M.Sc., Ph.D., Sp.A(K). (34) Prof. dr. Titik Nuryastuti, M.Si., Ph.D., Sp.MK(K). (35) Prof. dr. Tri Wibawa, Ph.D., Sp.MK(K)

A Hybrid CNN-Extreme Learning Machine with Augmented Dataset for DNA Damage Classification Using Comet Assay from Buccal Mucosa Sample. [2021].
(1) YUES TADRIK HAFIYAN (2) Afiahayati, S.Kom., M.Cs., Ph.D (3) drg. Ryna Dwi Yanuaryska, Ph.D (4) Edgar Anarossi (5) VINCENT MICHAEL S (6) JOKO TRIYANTO (7) Prof. Yasubumi Sakakibara, Ph.D.

A Hybrid Convolutional Neural Network and Support Vector Machine for Dysarthria Speech Classification. [2021].
(1) HANIFIA DYONIPUTRI (2) Afiahayati, S.Kom., M.Cs., Ph.D

Predicting Secondary Structure of Protein Using Hybrid of Convolutional Neural Network and Support Vector Machine. [2021].
(1) VINCENT MICHAEL S (2) ZAKI INDRA SUKMA (3) Afiahayati, S.Kom., M.Cs., Ph.D

A Review of Vehicle Annotation Method for Urban Traffic Surveillance. [2021].
(1) DONNY AVIANTO (2) Prof. Drs. Agus Harjoko, M.Sc., Ph.D. (3) Afiahayati, S.Kom., M.Cs., Ph.D

Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia. [2020].
(1) Prof. dr. Gunadi, Ph.D, Sp.BA., Subsp.DA(K) (2) drh. Hendra Wibawa, M.Si., Ph.D. (3) MARCELLUS (4) dr. Mohamad Saifudin Hakim, M.Sc, Ph.D. (5) dr. Marselinus Edwin Widyanto Daniwijaya, Ph.D., Sp. MK (6) dr. Raden Ludhang Pradipta Rizki, M.Biotech., Sp.MK (7) Endah Supriyati (8) dr. Dwi Aris Agung Nugrahaningsih, M.Sc., Ph.D (9) Afiahayati, S.Kom., M.Cs., Ph.D (10) dr. Siswanto, Sp.P(K) (11) dr. Kristy Iskandar, M.Sc, Ph.D, Sp.A. Subsp.Neuro.(K) (12) dr. Nungki Anggorowati, Sp.PA(K)., Ph.D. (13) ALVIN SANTOSO KALIM (14) Dyah Ayu Puspitarani (15) KEMALA ATHOLLAH (16) Prof. dr. Eggi Arguni, M.Sc., Ph.D., Sp.A(K). (17) Prof. dr. Titik Nuryastuti, M.Si., Ph.D., Sp.MK(K). (18) Prof. dr. Tri Wibawa, Ph.D., Sp.MK(K)

Transcriptome Profile of Next Generation Sequence Data Related to Inflammation on Nasopharyngeal Carcinoma Cases in Indonesia. [2020].
(1) DIGDO SUDIGYO (2) GISTI RAHMAWATI (3) DICKA W SETIASARI (4) RISKY HISKIA POLUAN (5) SALSABILA LUTHFI S (6) TIRTA WARDANA (7) CITA HERAWATI (8) dr. Didik Setyo Heriyanto, Sp.PA(K)., Ph.D (9) Dr. dr. Sagung Rai Indrasari, M.Kes., Sp.T.H.T.K.L(K), FICS. (10) Afiahayati, S.Kom., M.Cs., Ph.D (11) Dr. Med. dr. Indwiani Astuti (12) Prof. dr. Sofia Mubarika Harjana, M.Med.Sc., Ph.D.

Transcriptome Related to Avoiding Immune Destruction in Nasopharyngeal Cancer in Indonesian Patients Using Next-Generation Sequencing. [2020].
(1) RISKY HISKIA POLUAN (2) DIGDO SUDIGYO (3) GISTI RAHMAWATI (4) DICKA W SETIASARI (5) SALSABILA LUTHFI S (6) TIRTA WARDANA (7) Dr. Med. dr. Indwiani Astuti (8) dr. Didik Setyo Heriyanto, Sp.PA(K)., Ph.D (9) Dr. dr. Sagung Rai Indrasari, M.Kes., Sp.T.H.T.K.L(K), FICS. (10) CITA HERAWATI (11) Afiahayati, S.Kom., M.Cs., Ph.D (12) Prof. dr. Sofia Mubarika Harjana, M.Med.Sc., Ph.D.

Transcriptome Profile of Next-Generation Sequencing Data Relate to Proliferation Aberration of Nasopharyngeal Carcinoma Patients in Indonesia. [2020].
(1) DICKA W SETIASARI (2) GISTI RAHMAWATI (3) DIGDO SUDIGYO (4) RISKY HISKIA POLUAN (5) SALSABILA LUTHFI S (6) TIRTA WARDANA (7) Dr. dr. Sagung Rai Indrasari, M.Kes., Sp.T.H.T.K.L(K), FICS. (8) CITA HERAWATI (9) dr. Didik Setyo Heriyanto, Sp.PA(K)., Ph.D (10) Dr. Med. dr. Indwiani Astuti (11) Afiahayati, S.Kom., M.Cs., Ph.D (12) Prof. dr. Sofia Mubarika Harjana, M.Med.Sc., Ph.D.

DETECTION ON HEAD OF MOTORCYCLIST WITHOUT HELMET: A REVIEW. [2020].
(1) SUTIKNO (2) Afiahayati, S.Kom., M.Cs., Ph.D (3) Prof. Drs. Agus Harjoko, M.Sc., Ph.D.

RNA-seq data of Banana Bunchy Top Virus (BBTV) Viruliferous and Non-Viruliferous Banana aphid (Pentalonia nigronervosa). [2020].
(1) Prof. Dr. Ir. Siti Subandiyah, M.Agr.Sc. (2) RUTH FETI RAHAYUNIATI (3) Dr. Ir. Sedyo Hartono, M.P. (4) Prof. Dr. Ir. Susamto, M.Sc. (5) Afiahayati, S.Kom., M.Cs., Ph.D (6) Alan Soffan, S.P., M.Sc., Ph.D.

Speech Recognition for People with Dysarthria using Convolutional Neural Network. [2019].
(1) MEISYARAH DWIASTUTI (2) Afiahayati, S.Kom., M.Cs., Ph.D

Evaluating Library Services Quality Using GDSS-AHP, LibQual, and IPA. [2018].
(1) MUHAMMAD IHSAN (2) Prof. Dr.-Ing. Mhd. Reza M. I. Pulungan, S.Si., M.Sc. (3) Afiahayati, S.Kom., M.Cs., Ph.D

Convolutional Neural Networks for Handwritten Javanese Character Recognition. [2018].
(3) Afiahayati, S.Kom., M.Cs., Ph.D